easyFlyTracker 0.14.2

An easy-to-use program for analyzing Drosophila Activity.

💜 easyFlyTracker.cibr.ac.cn 💜

EasyFlyTracker is an easy-to-use Python 3-based package that can track and analyze Drosophila sleep and locomotor activity based on video shooting. It can be used for high-throughput simultaneous tracking and analysis of drug-treated individual adult fly. This software will accelerate basic research on drug effect studies with fruit flies.

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Features

• EasyFlyTracker is open-source.
• EasyFlyTracker is easy to use and fast.
• EasyFlyTracker is easily expandable.
• EasyFlyTracker supports simultaneous tracking of Drosophila with multiple Chambers and low-cost.
• EasyFlyTracker supports the selection of specific flies.
• EasyFlyTracker supports group tracking of Drosophila.
• EasyFlyTracker supports different outputs.
• Drug-treatment study example of EasyFlyTracker is provided.
• All the products lists are provided for your information.

Installation

Online installation

Install the PyPI package:

pip install easyFlyTracker

or

pip install -i https://pypi.org/simple/ easyFlyTracker

or

conda install easyFlyTracker

Or local installation

Clone the repository:

git clone https://github.com/azzhu/EasyFlyTracker.git

or download and extract the zip into your project folder.

Then install it using the local installation command:

python setup.py build
python setup.py install

Documentation

💜 EasyFlyTracker documentation: http://easyflytracker.cibr.ac.cn/#/document

Forum

💜 EasyFlyTracker forum: http://easyflytracker.cibr.ac.cn/#/suggest

Usage

The program contains two commands:

easyFlyTracker

• SYNOPSIS

easyFlyTracker [config_file_path]
easyFlyTracker -h 
easyFlyTracker --help

• DESCRIPTION

This command is used to track fruit flies and save the results. Receiving a command line argument, the program runs normally when passing the configuration file path.For details about the parameters in the configuration file, see config.yaml. To view the help information about the command, run the command with -h or --help param.

easyFlyTracker_analysis

• SYNOPSIS

easyFlyTracker_analysis [config_file_path]
easyFlyTracker_analysis -h 
easyFlyTracker_analysis --help

• DESCRIPTION

This command is used to analyze tracing results and display them graphically. Receiving a command line argument, the program runs normally when passing the configuration file path.For details about the parameters in the configuration file, see config.yaml. To view the help information about the command, run the command with -h or --help param.

Quick Start

There are demo videos in the tests folder. You can use the data to get started quickly.

1. Set the correct video path, output folder path, and other parameters of interest in config.yaml;

2. To track the flies, run the command:

   easyFlyTracker [your config file path]
   

3. To analyze the trace results, run the command:

   easyFlyTracker_analysis [config_file_path]
   

   Wait for the analysis to complete and the results are saved in the output folder.

Useful Links

💜 EasyFlyTracker homepage: http://easyFlyTracker.cibr.ac.cn/

💜 CIBR homepage: http://www.cibr.ac.cn/

License

EasyFlyTracker is released under the MIT license.