user-friendly pipeline for GWAS fine-mapping.

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  • License: MIT License (MIT)
  • Author: Jianhua Wang
  • Requires: Python >=3.8, <3.12
Classifiers

Project description

easyfinemap

pypi python Build Status codecov License: MIT PyPI download month Build Status

user-friendly pipeline for GWAS fine-mapping

Features

  • Prepare LD reference for fine-mapping
  • Standardize input summary statistics
  • Identify independent loci by distance, LD clumping, or conditional analysis
  • Fine-mapping with or without LD reference

Finemapping approaches

  • LD-free
    • aBF
  • LD-based
    • FINEMAP
    • CAVIARBF
    • PAINTOR

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Jianhua-Wang from gravatar.com Jianhua-Wang

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License (MIT)
  • Author: Jianhua Wang
  • Requires: Python >=3.8, <3.12
Classifiers

Release history Release notifications | RSS feed

0.4.6

0.4.4

0.4.3

0.4.2

0.4.1

0.4.0

0.3.9

0.3.8

0.3.5

0.3.2

0.2.6

0.2.5

This version

0.2.4

0.2.3

0.2.1

0.2.0

0.1.4

0.1.3

0.1.2

0.1.1

0.0.5

0.0.4

0.0.3

0.0.2

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