user-friendly pipeline for GWAS fine-mapping.
Project description
easyfinemap
user-friendly pipeline for GWAS fine-mapping
- Documentation: https://Jianhua-Wang.github.io/easyfinemap
- GitHub: https://github.com/Jianhua-Wang/easyfinemap
- PyPI: https://pypi.org/project/easyfinemap/
- Free software: MIT
Features
- Prepare LD reference for fine-mapping
- Standardize input summary statistics
- Identify independent loci by distance, LD clumping, or conditional analysis
- Fine-mapping with or without LD reference
Finemapping approaches
- LD-free
- aBF
- LD-based
- FINEMAP
- CAVIARBF
- PAINTOR
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