easyliftover 0.0.16

A python package for lifting over biological files

easy-liftover

This repository wraps the pyliftover package to provide an option for lifting over common file types.

Installation

PyPi

This package is available via PyPi. To install it, run:

pip install easyliftover

Docker

This package is also available as a Docker image. To use it, run:

docker pull bigdatainbiomedicine/easyliftover

Usage

from easyliftover import liftover_path, liftover_url

result = liftover_path(<fromGenome>, <toGenome>, <path>, <fileType>)
result = liftover_url(<fromGenome>, <toGenome>, <url>, <fileType>)

The fileType parameter is optional. If it is not provided, the file type will be inferred from the file extension.

Supported file types

Information about which file types are supported can be found here