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An(other) implementation of Explicit Duration Hidden Semi-Markov Models in Python 3

Project description

edhsmm

An(other) implementation of Explicit Duration Hidden Semi-Markov Models in Python 3

The EM algorithm is based on Yu (2010) (Section 3.1), while the Viterbi algorithm is based on Benouareth et al. (2008).

The code style is inspired from hmmlearn and jvkersch/hsmmlearn.

Implemented so far

  • EM algorithm
  • Scoring (log-likelihood of observation under the model)
  • Viterbi algorithm
  • Generate samples
  • Support for multivariate Gaussian emissions
  • Support for multiple observation sequences
  • Support for multinomial (discrete) emissions

Dependencies

  • python >= 3.5
  • numpy >= 1.17
  • scikit-learn >= 0.16
  • scipy >= 0.19

Installation & Tutorial

Via pip:

pip install edhsmm

Via setup.py:

python setup.py install

Test in venv (Windows):

python -m venv venv
venv\Scripts\activate
pip install --upgrade -r requirements.txt
python setup.py install

Note: Also run pip install notebook matplotlib to run the notebooks.

For tutorial, see the notebooks. This also serves as some sort of "documentation".

Found a bug? Suggest a feature? Please post on issues.

Project details


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