EDRN RDF Server
Project description
Introduction
Server for the Early Detection Research Network (EDRN) that provides descriptions of EDRN’s knowledge using the Resource Description Format (RDF).
edrn.rdf Installation
To install edrn.rdf into the global Python environment (or a workingenv), using a traditional Zope 2 instance, you can do this:
When you’re reading this you have probably already run easy_install edrn.rdf. Find out how to install setuptools (and EasyInstall) here: http://peak.telecommunity.com/DevCenter/EasyInstall
If you are using Zope 2.9 (not 2.10), get pythonproducts and install it via:
python setup.py install --home /path/to/instance
into your Zope instance.
Create a file called edrn.rdf-configure.zcml in the /path/to/instance/etc/package-includes directory. The file should only contain this:
<include package="edrn.rdf" />
Alternatively, if you are using zc.buildout and the plone.recipe.zope2instance recipe to manage your project, you can do this:
Add edrn.rdf to the list of eggs to install, e.g.:
[buildout] ... eggs = ... edrn.rdf
Tell the plone.recipe.zope2instance recipe to install a ZCML slug:
[instance] recipe = plone.recipe.zope2instance ... zcml = edrn.rdf
Re-run buildout, e.g. with:
$ ./bin/buildout
You can skip the ZCML slug if you are going to explicitly include the package from another package’s configure.zcml file.
Changelog
0.0.8 - Official EKE Database
This release updates the database server changing it from pongo to compass1. The new server, compass1, hosts the official RDF source information and contains no funky testing data like “Greg’s Cool Protocol”.
0.0.7 - Protocol Types and Eligibility Criteria
Greg Warnick has added additional data to the DMCC RDF database, comprising the two following new slots:
Elibility_critera describing eligibility criteria of a protocol
Protocol_type, what we thought was once long lost, is back!
This release of the RDF Server provides these two additional fields. Additionally, it updates its test data and function test battery.
0.0.6 - Investigators and Staff Strike Back
The “Site” view within the DMCC RDF database has gotten tons of action recently. It’s changed as follows:
Site_Specialty_Description is now called Site_Program_Description
New field: IDs_for_Investigators
New field: IDs_for_CoInvestigators
New field: IDs_for_CoPrincipalInvestigator
In addition, the Registered_Person view gained four new fields:
Fax
Specialty
Photo
EDRN_Title
Therefore, this release of the EDRN RDF Server accommodates these updates. In addition, it also updates its battery of tests and test data.
0.0.5 - Investigators and Staff
The “Site” view within the DMCC RDF database now provides primary investigators, co-investigators, and other staff members at each site. This release updates the Site RDF generation to include such details.
0.0.4 - Database Correction
Release 0.0.3 got away with a test database setting still set. This release corrects that and uses the correct source of RDF data.
0.0.3 - Registered People
This release of EDRN RDF Server provides a new data source: registered people. Registered people are people known to EDRN. This data source provides RDF descriptions of EDRN people. In addition, it also fixes the following issues:
CA-296: Site-Specific URI Prefix missing on Protocol control panel. Added it in r4905.
CA-285: Numeric fields of research replaced with actual names; r4906.
CA-264: Export registered people; r4907.
In addition, we’ve reduced the amount of test data and made the unit tests run a lot faster.
0.0.2 - New DB Structure
This release of the EDRN RDF Server accommodates the new DMCC database structure, particularly for diseases and protocols. Specifically, it addresses these issues:
CA-252: http://ginger.fhcrc.org/dmcc/rdf-data/diseases/rdf produces error
CA-253: http://ginger.fhcrc.org/dmcc/rdf-data/protocols/rdf produces error
In addition, it updates the functional tests’ test database.
0.0.1 - Protocols
This release of the EDRN RDF Server includes implementation of RDF service for EDRN Protocols and Studies as tracked by the Data Management and Coordinating Center (DMCC).
In addition, this release contains:
Fixes to the layout of control panel pages for Body Systems, Diseases, Publications, and Site RDF sources.
Addition of a download URL to the PyPI package data.
Updates to the functional tests’ test database.
0.0.0 - Unreleased
Initial release