edrnsite.policy 1.0.5

EDRN Public Portal Site Policy and Component Orchestration

This is the “policy” product for the public portal of the Early Detection Research Network (EDRN). This product, intended for Plone, specifies no custom content types or look-and-feel, but instead specifies minimum policy settings and orchestrates all other dependent components. So, to turn a Plone site into the EDRN public portal, just install this component.

It was developed by the Informatics Center (IC), operated by JPL.

Installation

Use Buildout with the plone.recipe.zope2instance recipe.

• Add edrnsite.policy to the list of eggs to install, e.g.:

  [buildout]
  ...
  eggs =
      ...
      edrnsite.policy

• Tell the plone.recipe.zope2instance recipe to install a ZCML slug:

  [instance]
  recipe = plone.recipe.zope2instance
  ...
  zcml =
      edrnsite.policy

• Re-run buildout, e.g. with:

  % ./bin/buildout

You can skip the ZCML slug if you are going to explicitly include the package from another package’s configure.zcml file.

Changelog

What follows is a history of changes from release to release. More detail about the issues mentioned here can be found at the issue tracker, at:

https://oodt.jpl.nasa.gov/jira/browse/CA

1.0.5 - NCI Hates Cookies

The following issues were addressed in this release:

• CA-743 - Disable Google Analytics

• CA-742 - Apply fix for CVE-2011-0720

• CA-597 - Add clock event to update sign-in secret

1.0.4 - The Googles, They Do Nothing

The following issue was addressed in this release:

• CA-726 - Google verification now requires specific page content

1.0.3 - A Mixed Bag

The following issues were addressed in this release:

• CA-681 - Fix the word staffers to say just staff

• CA-698 - “Structural” objects appear in searches

1.0.2 - Specimen Search

This time around, the policy package implements a dynamic search page for EDRN specimens. (There is no corresponding issue in the issue tracker for this new feature; or if there is, the issue tracker is down as I write this and can’t confirm.)

The following issues are also addressed by this release:

• CA-684 - Breadcrumb links are not correct on specimen search tab

• CA-667 - Organ and title edits that were added were lost when re-ingesting

1.0.1 - Ingest Cleanup

This release addresses the following:

• CA-649 - Automatic ingest is not updating publication state

• CA-662 - Remove “Potential Link Breakage” message from automatic ingest

It also adds a dynamic list of EDRN members and allows YouTube videos to be embedded in portal pages. See the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA for more details.

1.0.0 - Automation Spam

This release addresses several issues: the automatic periodic ingest of RDF information into the portal from its various information sources. You can read more about this issue at https://oodt.jpl.nasa.gov/jira/browse/CA-528.

It also adds search and tracking of tissue and other specimens from ERNE, the EDRN Resource Network Exchange.

Finally, it reworks the logic by which the emailed portal notices are sent. Previously, any content addition, deletion, modification, or any content publication state change would trigger an email to the DMCC. These included all changes during RDF ingest, which could amount to thousands of such changes.

Now, the email notice is sent solely if the user who’s doing the change is a member of the “National Cancer Institute” group. For more details on this update, see https://oodt.jpl.nasa.gov/jira/browse/CA-644.

0.0.7 - The Eleventh Hour

After viewing the new look-and-feel for EDRN across a variety of applications, management suddenly realizes they don’t like it. This release attempts to satisfy them. See https://oodt.jpl.nasa.gov/jira/browse/CA-599 for more.

0.0.6 - Jackie Hates Our Content

In release 0.0.6 of this component, we’ve addressed the following issues:

• https://oodt.jpl.nasa.gov/jira/browse/CA-577 - Update the Sample Reference Sets page

• https://oodt.jpl.nasa.gov/jira/browse/CA-579 - Access to secure web site link goes to wrong URL

• https://oodt.jpl.nasa.gov/jira/browse/CA-582 - Publications missing authors

0.0.5 - Content in Four Part Harmony

The following issues are addressed in this release:

• Content harmonized between the old operational portal (version 2) and beta demonstration portal (version 3 at http://edrn.jpl.nasa.gov/portal3.0).

• https://oodt.jpl.nasa.gov/jira/browse/CA-379 - Generate email notification to DMCC when portal changes are approved at NCI

• https://oodt.jpl.nasa.gov/jira/browse/CA-540 - PI not showing for a site

• https://oodt.jpl.nasa.gov/jira/browse/CA-541 - Add to software repository

• https://oodt.jpl.nasa.gov/jira/browse/CA-549 - Biological Specimens Link under Resources - Page doesn’t exist

• https://oodt.jpl.nasa.gov/jira/browse/CA-559 - The current EDRN-Wide Collaborations link downloads a protocol search html

• https://oodt.jpl.nasa.gov/jira/browse/CA-561 - Subscription to a listserv link - page doesn’t exist

• https://oodt.jpl.nasa.gov/jira/browse/CA-563 - Remove CDE Links from Portal

0.0.4 - To Be Named At Release Time

The following issues are addressed in this release:

• http://oodt.jpl.nasa.gov/jira/browse/CA-526 - Duplicate science-data deployed as part of portal setup

0.0.3 - EDRN SC Meeting 2010 RDF-ification

• http://oodt.jpl.nasa.gov/jira/browse/CA-521 - Load EDRN SC Mar 2010 meeting RDF into portal cache

• http://oodt.jpl.nasa.gov/jira/browse/CA-498 - Disable mailing of password-reset messages.

• http://oodt.jpl.nasa.gov/jira/browse/CA-508 - Travel Fellowships out-of-date

• http://oodt.jpl.nasa.gov/jira/browse/CA-509 - Research Tools need updating

0.0.2 - Starting Content & Polish

This release includes a refresh cache of knowledge from the EDRN Catalog and Archive Service, the Biomarker Database, and the EDRN DMCC RDF Service. In addition, this release addresses the following issues:

• http://oodt.jpl.nasa.gov/jira/browse/CA-482 - For Researchers - EDRN Investigators’ Publications - Page Doesn’t Exist

• http://oodt.jpl.nasa.gov/jira/browse/CA-481 - Remove CDE Spreadsheet and PDF. Add CDE Search

• http://oodt.jpl.nasa.gov/jira/browse/CA-480 - Study Design Guidance Tools page in “old” format

• http://oodt.jpl.nasa.gov/jira/browse/CA-478 - Public, Patients, Advocates - EDRN Informatics link - Page Does Not Exist

• http://oodt.jpl.nasa.gov/jira/browse/CA-470 - List of “BDL” sites point to old DMCC site

• http://oodt.jpl.nasa.gov/jira/browse/CA-435 - Remove :log in to add comments from public portal pages

• http://oodt.jpl.nasa.gov/jira/browse/CA-486 - Application Procedure, Receipt Dates, and Review - Contact Investigator Link - Page Doesn’t Exist

0.0.1 - Content Updates and Broken Links

The following issues have been addressed in this release:

• http://oodt.jpl.nasa.gov/jira/browse/CA-469 - List of sites on “About EDRN” still points to the old site at DMCC

• http://oodt.jpl.nasa.gov/jira/browse/CA-471 - Under patient advocates, press releases - sorry page doesn’t exist…

• http://oodt.jpl.nasa.gov/jira/browse/CA-467 - PI page does not exist from EC page

0.0.0 - Unreleased

Initial release into beta.

Copyright

Copyright 2009-2010 by the California Institute of Technology. ALL RIGHTS RESERVED.

The Software is owned by Caltech/JPL and is protected by United States copyright laws and applicable international treaties and/or conventions. The United States Government may have prior rights to use some or all of the Software as determined under applicable contracts and license agreements with Caltech/JPL.

This software was developed at the Jet Propulsion Laboratory, an operating division of the California Institute of Technology and is not available for use by any person, organization, or other entity without prior, specific written permission.