Skip to main content

EEGIO: An io package for eeg data that is MNE-Python and MNE-BIDS compatible .

Project description

# EEG IO [![Build Status](]( [![Coverage Status](./coverage.svg)](./coverage.svg) [![Code style: black](]( ![GitHub]( ![PyPI]( ![GitHub last commit]( <a href=””><img src=”” /></a> ![GitHub repo size](

For an easy-to-use API interfacing with EEG data in EDF, or FIF format in the BIDS-EEG layout. This module stores the code for IO of EEG data for human patients, and pipelining code to convert clinical center data (i.e. time series eeg, clinical metadata) into a developer-friendly dataset that is also invertible and debug-friendly.

## Dev Process - TODO

  • [ ] Add support for adding structural context via neuroimaging processed data (e.g. FreeSurfer)

# Installation Guide EEGio is intended to be a lightweight wrapper for easily analyzing large batches of patients with EEG data. eegio relies on the following libraries to work:

numpy scipy scikit-learn pandas mne mne-bids pybids seaborn matplotlib pyedflib (deprecated) xlrd (deprecated)


## Intended Users / Usage

Epilepsy researchers dealing with EEG data compliant with BIDS and MNE formats. Anyone with human patient EEG data. See example and docs for info on how to format this.

### Setting Up the BIDS Directory and Reading EEG Data From EDF/FiF These are just lightweight wrappers of MNE/pyedflib reading to load in EDF/FiF data easily, so that raw EEG ts are readily accessible in Python friendly format. We provide an example that was built off of the examples in MNE-BIDS. See [example](./examples/

For more info, see tutorials and documentation.

# Contributing We welcome contributions from anyone. Our [issues]( page is a great place for suggestions! If you have an idea for an improvement not listed there, please [make an issue]( first so you can discuss with the developers. For information on setting up testing, see [testing guide](./docs/

# License

This project is covered under the GNU GPL License.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for eegio, version 0.1.0
Filename, size File type Python version Upload date Hashes
Filename, size eegio-0.1.0-py3-none-any.whl (3.0 kB) File type Wheel Python version py3 Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page