eke.biomarker 0.0.3

Biomarkers for the EDRN Knowledge Environment

This product, eke.biomarker, provides display and RDF ingest of the biomarkers being studied by the Early Detection Research Network (EDRN). Biomarkers are chemical indicators for disease, and in the case of EDRN, the disease being pursued is cancer. This package lets a researcher browse, search for, and discover interesting biomarkers, determine how research progress is being made, find out statistical values of the biomarkers, and so forth. These features are integral to the EDRN Knowledge Environment (EKE). EDRN uses the EKE to make it easy to discover, share, search for, and retrieve all of EDRN’s collective knowledge, including cancers and other diseases, protocols, specimens, participants, staff, and — as in the case of this product — biomarkers.

Although intended for the EDRN public portal, it can be installed in any Plone compatible site.

This software is developed by the EDRN Informatics Center at JPL, operated by the California Institute of Technology, for NCI.

Installation

Use Buildout with the plone.recipe.zope2instance recipe.

• Add eke.biomarker to the list of eggs to install, e.g.:

  [buildout]
  ...
  eggs =
      ...
      eke.biomarker

• Tell the plone.recipe.zope2instance recipe to install a ZCML slug:

  [instance]
  recipe = plone.recipe.zope2instance
  ...
  zcml =
      eke.biomarker

• Re-run buildout, e.g. with:

  % ./bin/buildout

You can skip the ZCML slug if you are going to explicitly include the package from another package’s configure.zcml file.

Changelog

What follows is a history of changes from release to release.

0.0.3 - The unnamed release

• http://oodt.jpl.nasa.gov/jira/browse/CA-511 - Need to index alternative biomarker names

0.0.2 - Various “CYA” Fixes

• http://oodt.jpl.nasa.gov/jira/browse/CA-499 - Disclaimer needed on biomarker list.

• http://oodt.jpl.nasa.gov/jira/browse/CA-500 - Show unpublished biomarkers in a biomarker folder.

• http://oodt.jpl.nasa.gov/jira/browse/CA-510 - Lock box for science data and biomarkers should disappear if a user has access to the object

0.0.1 - Security Ingest

The sole issue addressed in this release is:

• http://oodt.jpl.nasa.gov/jira/browse/CA-475 - “Public” should only see biomarkers and science data that have QAState=Accepted. Disregard Security flag.

0.0.0 - Unreleased

Initial release into beta.

Copyright

Copyright 2009-2010 by the California Institute of Technology. ALL RIGHTS RESERVED.

The Software is owned by Caltech/JPL and is protected by United States copyright laws and applicable international treaties and/or conventions. The United States Government may have prior rights to use some or all of the Software as determined under applicable contracts and license agreements with Caltech/JPL.

This software was developed at the Jet Propulsion Laboratory, an operating division of the California Institute of Technology and is not available for use by any person, organization, or other entity without prior, specific written permission.