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DataJoint Element for Animal Management

Project description

DataJoint Element - Animal

There are two modules in element-animal:

  • subject: contains the basic information of subject, including Strain, Line, Subject, Zygosity, and SubjectDeath information
  • genotyping: this module is designed for labs that keep track of colony management and genotyping results, containing information of breeding, weaning, housing, and genotyping.

See Background for the background information and development timeline.

Installation

pip install element-animal

If you already have an older version of element-animal installed using pip, upgrade with

pip install --upgrade element-animal

Element usage

  • element-animal is not a complete workflow by itself, but rather a modular design of tables and dependencies that can be flexibly attached to any DataJoint workflow.

  • See the workflow-animal repository for example usage of element-animal.

  • Also refer to the workflow-calcium-imaging and workflow-array-ephys repositories for example usages of element-animal when combining with other elements.

  • See the datajoint-elements repository for a detailed description of the DataJoint elements and workflows.

Element architecture

Subject Diagram

subject diagram

Genotyping Diagram

genotyping diagram

Project details


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