Calcium Imaging DataJoint element
Project description
DataJoint Element - Functional Calcium Imaging
DataJoint Element for functional calcium imaging with
ScanImage,
Scanbox,
Nikon NIS-Elements,
and Bruker Prairie View
acquisition software; and
Suite2p,
CaImAn, and
EXTRACT analysis
software. DataJoint Elements collectively standardize and automate
data collection and analysis for neuroscience experiments. Each Element is a modular
pipeline for data storage and processing with corresponding database tables that can be
combined with other Elements to assemble a fully functional pipeline.
Experiment Flowchart
Data Pipeline Diagram
Getting Started
-
Install from PyPI
pip install element-calcium-imaging
Support
- If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.
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