Calcium Imaging DataJoint element
Project description
DataJoint Element - Functional Calcium Imaging
DataJoint Element for functional calcium imaging with
ScanImage,
Scanbox,
Nikon NIS-Elements,
and Bruker Prairie View
acquisition software; and
Suite2p,
CaImAn, and
EXTRACT analysis
software. DataJoint Elements collectively standardize and automate
data collection and analysis for neuroscience experiments. Each Element is a modular
pipeline for data storage and processing with corresponding database tables that can be
combined with other Elements to assemble a fully functional pipeline.
Experiment Flowchart
Data Pipeline Diagram
- We have designed three variations of the pipeline to handle different use cases. Displayed above is the default
imaging
schema. Details on all of theimaging
schemas can be found in the Data Pipeline documentation page.
Getting Started
-
Install from PyPI
pip install element-calcium-imaging
Support
- If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.
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