DataJoint Element for Volume Segmentation

Project description

DataJoint Element - ZStack

DataJoint Element for z-stack (volumetric) imaging, features cell segmentation with cellpose, data upload to BossDB, and data visualization with Neuroglancer. DataJoint Elements collectively standardize and automate data collection and analysis for neuroscience experiments. Each Element is a modular pipeline for data storage and processing with corresponding database tables that can be combined with other Elements to assemble a fully functional pipeline.

Experiment Flowchart

flowchart

Data Pipeline Diagram

pipeline

Getting Started

Install from PyPI
```
pip install element-zstack
```
Interactive tutorial on GitHub Codespaces
Documentation

Support

If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.

Project details

Release history Release notifications | RSS feed

This version

0.1.2

Aug 10, 2023

0.1.0

May 19, 2023

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