DataJoint Element for Volume Segmentation
Project description
DataJoint Element - ZStack
DataJoint Element for z-stack (volumetric) imaging, features cell segmentation with cellpose, data upload to BossDB, and data visualization with Neuroglancer. DataJoint Elements collectively standardize and automate data collection and analysis for neuroscience experiments. Each Element is a modular pipeline for data storage and processing with corresponding database tables that can be combined with other Elements to assemble a fully functional pipeline.
Experiment Flowchart
Data Pipeline Diagram
Getting Started
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Install from PyPI
pip install element-zstack
Support
- If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.
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