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Tools for using article data in Python.

Project description

elife-tools

Latest Version https://coveralls.io/repos/elifesciences/elife-tools/badge.svg?branch=master&service=github

Tools for using article data in Python

Supports

  • Python 2.7
  • Python >=3.5

Non-Python dependencies

  • libxml2 (Ubuntu, Arch)

Install for users

Install via pip:

$ pip install elifetools

You might need to install libxml manually first

$ sudo STATIC_DEPS=true pip install lxml==3.4.1

To install the latest version directly from git

$ pip install git+https://github.com/elifesciences/elife-tools.git@master

or you can add it to your project’s requirements.txt file

git+https://github.com/elifesciences/elife-tools.git@master

Install for developers

Clone the git repo

Make a virtualenv (optional)

Then

$ python setup.py install

Example usage

>>> from elifetools import parseJATS as parser
>>> soup = parser.parse_document('sample-xml/elife-kitchen-sink.xml')
>>> print parser.doi(soup)

More code examples can be found in tests/basic_usage_test.py

These code examples can be run with:

$ cd elifetools/
$ python -m unittest discover -s tests  -p *_test.py

and with xml output:

$ cd elifetools/
$ python -m xmlrunner discover -s tests -p *_test.py

Testing

You can run the full automated test suite from the base folder with:

$ python -m unittest discover elifetools/tests

or you can run tests with coverage:

$ coverage run -m unittest discover elifetools/tests

and then view the coverage report:

$ coverage report -m

License

The MIT License

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
elifetools-0.1.8-py3-none-any.whl (55.7 kB) Copy SHA256 hash SHA256 Wheel py3 Jan 5, 2018
elifetools-0.1.8.tar.gz (53.2 kB) Copy SHA256 hash SHA256 Source None Jan 5, 2018

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