A simple CLI toolbox to use the European Nucleotide Archive (ENA)
Project description
ena-utils is a small python package that provides a CLI to submit nucleotides sequences to the European Nucleotide Archive (ENA).
Supported submission types
Reads
Features
File upload
Study registration
Experiment registration
Run registration
Sample registration
Requirements
Python3
Webin account
Installation
The latest release is available on PyPI and can be installed using pip:
$ pip install ena-utils
Isolated environments using pipx
Install and execute ena-utils in an isolated environment using pipx.
Install pipx and make sure that the $PATH is correctly configured.
$ python3 -m pip install --user pipx $ pipx ensurepath
Once pipx is installed use following command to install ena-utils.
$ pipx install ena-utils $ which ena-utils ~/.local/bin/ena-utils
Usage
The latest documentation is available at https://readthedocs.org.
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Source Distribution
Built Distribution
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