a package for ENrichment ANalyses
Project description
enan
a package for ENrichment ANalyses.
the following methods have been implemented:
- Fisher's exact test (FET)
- Binomial test (BT)
- Gene set enrichment analysis (GSEA)
- single sample GSEA (ssGSEA)
- Connectivity analysis
Dependency
- python 3.6
- requirements: numpy, pandas, scipy, tqdm
Setup
pip install enan
- for conda environment, please use skeleton
Usage
see samplecode.ipynb
Licence
This software is released under the MIT License.
Authors
MIZUNO Tadahaya
References
This package is inspired from the following brilliant databases and studies:
- Nat Genet. 2003 Jul;34(3):267-73.
- PNAS. October 25, 2005 102 (43) 15545-15550.
- BMC Bioinformatics. 2013;128(14).
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. 2016; gkw377 .
- Science. 2006 Sep 29;313(5795):1929-35.
- MsigDB
- EnrichR
- CMap
Bug Report
If you would like to report any bugs about this package, don't hesitate to create an issue on github here, or email me:
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