Utility to search and download Ensembl data such as genome assemblies and gene annotations
Project description
ensembl_assembly
Search and download Ensembl data such as genome assemblies and gene annotations
This program will produce a tabular-like format with the metadata for the genomes matching user criteria. It may also download desired data to a local folder.
Dependencies
- pandas
- easyterm
These can be installed through conda:
conda install pandas
conda install -c mmariotti easyterm
Usage
By default, the program will show information for all available genome assemblies (most recent release). To see options, run with:
ensembl_assembly.py -h
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
ensembl_assembly-0.0.3.tar.gz
(7.5 kB
view hashes)
Built Distribution
Close
Hashes for ensembl_assembly-0.0.3-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | af4366579a75e408c93cc1123f6ba33335617a753b67145dde4a8b68b5810962 |
|
MD5 | 95910cbbfda92f98d574a16aacfc685d |
|
BLAKE2b-256 | 945a84acf411cb8821a6cf532bc2a5479d622ea6363727f0d9b4fa6eb2472d07 |