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Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.

Project description

Ephemeris is a small Python 3 library and set of scripts for managing the bootstrapping of Galaxy plugins - tools, index data, and workflows.


0.10.8 (2023-04-18)

0.10.7 (2021-06-08)

0.10.6 (2020-05-04)

0.10.5 (2020-02-29)

0.10.4 (2019-10-05)

0.10.3 (2019-07-18)

0.10.2 (2019-06-04)

0.10.1 (2019-06-04)

0.10.0 (2019-05-29)

0.9.0 (2018-05-23)

0.8.0 (2017-12-29)

  • Many new documentation enhancements (thanks to @rhpvorderman, and others)

  • rename of shed-install to shed-tools and add a new –latest and –revision argument (thanks to @rhpvorderman)

  • many fixes and new tests by (thanks to @mvdbeek)

  • Parallelization of run-data-managers (thanks to @rhpvorderman)

  • run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)

  • run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)

  • ephemeris will now use https by default instead of http (thanks to @bgruening)

0.7.0 (2017-06-27)

  • Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) - docs are now published to

  • Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).

  • Enable data managers to run with API keys (thanks to @rhpvorderman).

  • Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).

  • Preserve readable order of keys while processing tool lists (thanks to @drosofff).

0.6.1 (2017-04-17)

  • Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various refactoring to reduce code duplication and Python 3 fixes. #36

0.6.0 (2017-04-10)

  • Add new connection options for setting up data libraries.

0.5.1 (2017-04-07)

  • Fix new run-data-managers CLI entrypoint.

0.5.0 (2017-04-06)

  • Add run-data-managers tool to trigger DM with multiple values and in order. #30

  • The workflow install tool now supports a directory of workflows. #27

  • enable global options in a tool yaml files, like install_resolver_dependencies: true #26

  • Mention mimum required galaxy versions. #23 (thanks to @mvdbeek)

0.4.0 (2016-09-07)

  • Be more generic in determining a server time-out (thanks to @afgane).

  • Get tool list entrypoint and improvements (thanks to @mvdbeek).

  • Rename tool_panel_section_name to tool_panel_section_label like ansible-galaxy-tools (thanks to @nturaga).

  • Add missing file tool_list.yaml.sample (thanks to @nturaga).

0.3.0 (2016-08-26)

  • More robust shed-install script, install dependencies by default, improve logging (thanks to @mvdbeek).

0.2.0 (2016-08-15)

  • Add tool generate a tool list from a Galaxy workflow file (thanks to @drosofff).

  • Fix various code quality issues including adding beta support for Python 3 (thanks in part to @mvdbeek).

0.1.0 (2016-06-15)

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