Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.
Project description
.. _readme:
.. image:: https://travis-ci.org/neuropycon/ephypype.svg?branch=master :target: https://travis-ci.org/neuropycon/ephypype
.. image:: https://codecov.io/gh/neuropycon/ephypype/branch/master/graph/badge.svg :target: https://codecov.io/gh/neuropycon/ephypype
.. image:: https://circleci.com/gh/neuropycon/ephypype.svg?style=svg :target: https://circleci.com/gh/neuropycon/ephypype
.. image:: https://zenodo.org/badge/92522975.svg :target: https://zenodo.org/badge/latestdoi/92522975
README
Description
Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype
Documentation
https://neuropycon.github.io/ephypype
Installation
Requirements
ephypype works with python3
- mne>0.14
- nipype
- h5py
These dependencies are automatically installed during ephypype installation (see :ref:ephy_install
).
We also recommend to install MNE python by following the installation instructions <http://martinos.org/mne/dev/install_mne_python.html#check-your-installation>
_
.. _ephy_install:
Install ephypype
To install ephypype, use the following command:
.. code-block:: bash
$ pip install -r requirements.txt https://api.github.com/repos/neuropycon/ephypype/zipball/master
.. comment: .. _conda_install:
Install dependencies with conda
+++++++++++++++++++++++++++++++
.. code-block:: bash
conda install pandas
conda install matplotlib
Software
Freesurfer ++++++++++
- Download Freesurfer software:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
- Follow the Installation instructions
https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall
.. comment: MNE +++
1. Download MNE software:
http://martinos.org/mne/dev/install_mne_c.html
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