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A tool for modelling infectious diseases.

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latest-release Downloads Language grade: Python Total alerts Test

A tool for creating and testing epidemiological models faster than ever for the mathematical modelling of infectious diseases. An idea from

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Install via pip install epispot
As a shorthand, use as import epispot as epi

Using Anaconda? Don't worry, it'll soon be avaliable in anaconda!

Getting Started

Check the guides and tutorials found in the tests/tutorials folder. All tutorials will have a .md file followed by a corresponding code file. If you get stuck, don't understand something, or just need to reference the documentation, per-class documentation can be found in the docs/epispot folder. You may also find it helpful to see the examples in the tests/examples folder.


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  • SIR-based models

    • Susceptible
    • Infected
    • Recovered
    • Exposed
    • Dead
    • Critical
    • Hospitalized
  • Custom-defined compartmental models

    • Create custom models using the Model class
  • Graphing Capabilities

    • Plot real data from a .csv file
    • Plot model predictions interactively
    • Compare different model predictions

Compile your model at the speed of light

and get insights that match

Documentation can easily be accessed from function, class, and file docstrings. Doc strings provide additional documentation on a certain function. They can be accessed by the built-in Python help() command. These strings are formatted in Github-flavored markdown. Additionally, all files will have a 'STRUCTURE' label.

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