EpiTools Plugin
Project description
Welcome to EpiTools!
EpiTools is a Python package and associated napari plugin to extract the membrane signal from epithelial tissues and analyze it with the aid of computer vision.
The development of EpiTools was inspired by the challenges in analyzing time-lapses of growing Drosophila imaginal discs.
The folded morphology, the very small apical cell surfaces and the long time series required a new automated cell recognition to accurately study growth dynamics.
Installation
The recommended way to install EpiTools is via
pip
python -m pip install epitools
To install the latest development version of EpiTools clone this repository
and run
python -m pip install -e .
Issues
If you encounter any problems, please file an issue along with a detailed description.
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
