A set of calibration and probabilistic programming tools for use with summerepi2
Project description
estival
Calibration and optimization tools for summer2 https://github.com/monash-emu/summer2
Estival provides a simple API for using summer2 CompartmentalModels with a variety of optimization frameworks, including
- pymc
- nevergrad
CHANGELOG
- 0.2.2
Add logprior/logposterior to BayesianCompartmentalModel - 0.2.3
Include tensorflow-probability(jax) for more (and better tested) stats modules - 0.2.4 Bugfix (vector priors were not exported to pymc correctly) Add Epoch support to allow DatetimeIndex targets
- 0.2.5 Bugfix for BinomialTarget (wasn't indexing modelled data)
- 0.2.6 Bugfix (reference index for models without date returned incorrect type)
- 0.3.0 Note - breaking changes! Remove old AuTuMN MCMC implementation Move nevergrad/pymc -> wrappers Expand likelihood output tools Include parallelism framework
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