evermore 0.4.1

Differentiable (binned) likelihoods in JAX.

evermore

Differentiable (binned) likelihoods in JAX.

Installation

python -m pip install evermore

From source:

git clone https://github.com/pfackeldey/evermore
cd evermore
python -m pip install .

Example - Model and Loss Definition

See more in examples/

evermore in a nutshell:

from typing import NamedTuple, TypeAlias

from flax import nnx
import jax
import jax.numpy as jnp
from jaxtyping import Array, Float, PyTree, Scalar

import evermore as evm

jax.config.update("jax_enable_x64", True)

# type defs
Hist1D: TypeAlias = Float[Array, "..."]
Hists1D: TypeAlias = dict[str, Hist1D]
Args: TypeAlias = tuple[
    nnx.GraphDef,
    nnx.State,
    Hists1D,
    Hist1D,
]


# define a simple model with two processes and two parameters
def model(params: PyTree, hists: Hists1D) -> Array:
    mu_modifier = params.mu.scale()
    syst_modifier = params.syst.scale_log_asymmetric(up=1.1, down=0.9)
    return mu_modifier(hists["signal"]) + syst_modifier(hists["bkg"])


def loss(
    dynamic: nnx.State,
    args: Args,
) -> Float[Scalar, ""]:
    graphdef, static, hists, observation = args
    params = nnx.merge(graphdef, dynamic, static)
    expectation = model(params, hists)
    # Poisson NLL of the expectation and observation
    log_likelihood = (
        evm.pdf.PoissonContinuous(lamb=expectation).log_prob(observation).sum()
    )
    # Add parameter constraints from logpdfs
    constraints = evm.loss.get_log_probs(params)
    log_likelihood += evm.util.sum_over_leaves(constraints)
    return -jnp.sum(log_likelihood)


# setup data
hists: Hists1D = {"signal": jnp.array([3.0]), "bkg": jnp.array([10.0])}
observation: Hist1D = jnp.array([15.0])


# define parameters, can be any PyTree of evm.Parameters
class Params(NamedTuple):
    mu: evm.Parameter[Float[Scalar, ""]]
    syst: evm.NormalParameter[Float[Scalar, ""]]


params = Params(mu=evm.Parameter(1.0), syst=evm.NormalParameter(0.0))

# split tree of parameters in a differentiable part and a static part
graphdef, dynamic, static = nnx.split(params, evm.filter.is_dynamic_parameter, ...)
args = (graphdef, static, hists, observation)

# Calculate negative log-likelihood/loss
loss_val = loss(dynamic, args)
# gradients of negative log-likelihood w.r.t. dynamic parameters
grads = nnx.grad(loss)(dynamic, args)
nnx.display(nnx.pure(grads))
# State({
#   'mu': Array(-0.46153846, dtype=float64, weak_type=True),
#   'syst': Array(-0.15436207, dtype=float64, weak_type=True)
# })

Contributing

See CONTRIBUTING.md for instructions on how to contribute.

License

Distributed under the terms of the BSD license.