VICC normalization routines for evidence
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Project description
Evidence Normalization
Service for normalizing evidence
Installation
Install from PyPI:
python3 -m pip install evidence-normalizer
To install ETL dependencies:
python3 -m pip install evidence-normalizer[etl]
Development
Clone the repo and create a virtual environment:
git clone https://github.com/cancervariants/evidence-normalization
cd evidence-normalization
python3 -m virtualenv venv
source venv/bin/activate
Install development dependencies and pre-commit:
python3 -m pip install -e '.[dev,etl,tests]'
pre-commit install
Backend Services
Evidence Normalization relies on Variation Normalization for normalizing Cancer Hotspots data. You will need to setup backend services and set the appropriate environment variables. See the README for more information.
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