Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations
Project description
ExTaxsI functions
Library overview
ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks:
load_configurations() - mandatory before using ExTaxsi functions - setting NCBI API key to allow data query
db_creation() - create FASTA, accession with taxonomy or enriched database
taxonomyID_converter() - convert taxid into organism taxonomy and viceversa
sunburst_plot() - create sunburst plot
scatterplot() - create scatterplot
worldmap_plot() - create worldmap plot
In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided.
Input files used are available in the examples directory.
For any doubt, please write to g.agostinetto@campus.unimib.it
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