extaxsi 0.3.4

Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations

ExTaxsI functions

Library overview

ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks:

• load_configurations() - mandatory before using ExTaxsi functions - setting NCBI API key to allow data query

• db_creation() - create FASTA, accession with taxonomy or enriched database

• taxonomyID_converter() - convert taxid into organism taxonomy and viceversa

• sunburst_plot() - create sunburst plot

• scatterplot() - create scatterplot

• worldmap_plot() - create worldmap plot

In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided. Input files used are available in the examples directory.

For any doubt, please write to [e-mail]