Fork of Joan Pallares extend_orf based on pyranges
Project description
extend_orfs
What does extend_orfs do?
It takes advantage of the PyRanges package (Stovner and Sætrom, 2019) and uses several of its functions to efficiently parse the sequence of thousands of transcripts and return its extended ORFs.
Using extend_orfs
You can install extend_orfs using PyPI or download it directly from GitHub.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file extend_orfs_pyranges-0.1.5.tar.gz
.
File metadata
- Download URL: extend_orfs_pyranges-0.1.5.tar.gz
- Upload date:
- Size: 9.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.4.2 requests/2.22.0 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.30.0 CPython/3.8.10
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | a5d768258a66be99f510e43ac6054afd2b53c5ae3fd91bfec6570e1a73041ae8 |
|
MD5 | 3d1f6847d7429a46a91ea4a645f14cfc |
|
BLAKE2b-256 | 518ac6f597ce4d7fededa04db82b693e76644ebce2739a13f029f4e793effe8c |