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FAstqc DAta PArser - A minimal parser to parse FastQC output data in Python

Project description

## Welcome to Fadapa FAstqc DAta PArser - The Easiest way to parse FastQC results.

[![Build](https://api.travis-ci.org/fadapa/fadapa.png?branch=master)](http://travis-ci.org/fadapa/fadapa/) [![Coverage](https://coveralls.io/repos/fadapa/fadapa/badge.png?branch=master)](https://coveralls.io/r/fadapa/fadapa?branch=master) [![Latest Version](https://pypip.in/version/fadapa/badge.svg?text=version)](https://pypi.python.org/pypi/fadapa/) [![Supported Python versions](https://pypip.in/py_versions/fadapa/badge.svg)](https://pypi.python.org/pypi/fadapa/)

## Installation

  1. Recomended way to install is using pip

    pip install fadapa

  2. Alternatively you can install esay_install

    easy_install fadapa

  3. You can also install from Github source code.

    cd git clone https://github.com/fadapa/fadapa.git cd fadapa python setup.py install

## Usage

# import fadapa from fadapa import Fadapa

#load file f = Fadapa(‘/path/to/fastqc_output_file.txt’)

#get file name print(f.file_name)

#get entire content print(f.content())

#get all module names and their status print(f.summary())

#get raw data of any module print(f.raw_module(‘module name’))

#get cleaned data of any module print(f.clean_data(‘module name’))

## Author

[Anand Reddy Pandikunta](http://www.avilpage.com)

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