Deep learning for biological sequences with fastai
Project description
Welcome to fastBio
fastBio is a library for manipulating data and creating and training deep learning models for biological sequencing data. It is an extension of the fastai v1 library.
A number of pretrained models for biological sequencing data can be loaded directly through fastBio with the LookingGlass and LookingGlassClassifier classes. These models are available for download at the sister repository LookingGlass.
If you find fastBio or LookingGlass useful, please cite the preprint:
Hoarfrost, A., Aptekmann, A., Farfanuk, G. & Bromberg, Y. Shedding Light on Microbial Dark Matter with A Universal Language of Life. bioRxiv (2020). doi:10.1101/2020.12.23.424215. https://www.biorxiv.org/content/10.1101/2020.12.23.424215v2.
Installation
You can install fastBio with pip (python 3 only):
pip3 install fastBio
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file fastBio-0.1.3.tar.gz.
File metadata
- Download URL: fastBio-0.1.3.tar.gz
- Upload date:
- Size: 16.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
13adb70778ddb6dfeb740fea511a4a5d33cc8ba5ea9a2dd99ef6e93a1fcf41ed
|
|
| MD5 |
8f0878f10b256394dda95c5104210388
|
|
| BLAKE2b-256 |
7a9b743d3a7ee900c6bb5dd398878289673e78248cf725d6dace8c7b7de2b7ae
|
File details
Details for the file fastBio-0.1.3-py3-none-any.whl.
File metadata
- Download URL: fastBio-0.1.3-py3-none-any.whl
- Upload date:
- Size: 19.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.3.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
2995df5b120c1369e08630e2d408671f24cc502db8a93fd343c8962f362620db
|
|
| MD5 |
a90d25fa5d10b1ce228ef42c72d2f6e4
|
|
| BLAKE2b-256 |
90101dcac3589d9d9dd090baff77414219dc79d0b5212879e5915892c523388b
|
