Tools for working with fasta files.
The fastatools package was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition.
Free software
Documentation: https://fastatools.readthedocs.io
Source Code: https://github.com/CFSAN-Biostatistics/fastatools
PyPI Distribution: https://pypi.python.org/pypi/fastatools
Features
Print the lengths of sequences.
Determine if two fasta files are equivalent.
Fix inconsistent line lengths and inconsistent lowercase.
Generate a reverse complement of a fasta file.
Extract a slice from a fasta file delimited by primers.
Extract a range of positions from a fasta file.
Citing fastatools
To cite fastatools, please reference the fastatools GitHub repository:
License
See the LICENSE file included in the fastatools distribution.
History
1.2.0 (2018-12-10)
First public release with docs and automated tests.
1.1.0 (2018-10-25)
Add range command to extract a range of positions from a fasta file.
Add equiv command to check for equivalent fasta files.
Add rewrite command to fix line length and uppercase/lowercase inconsistencies.
1.0.0 (2018-09-21)
Add length command to print the length of all the sequences in fasta files.
0.1.0 (2017-11-30)
Project started.
2 maintainers
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