Skip to main content

Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.

Project description

fastDFE

codecov Documentation Status PyPI version License: GPL v3 Downloads DOI

fastdfe is a package for fast, flexible, and hierarchical inference of the distribution of fitness effects (DFE) from site frequency spectra (SFS). It also contains a versatile VCF-to-SFS parser with support for ancestral allele and site-degeneracy annotation.

Please see the documentation for all the details.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

fastdfe-1.1.8.tar.gz (138.6 kB view details)

Uploaded Source

Built Distribution

fastdfe-1.1.8-py3-none-any.whl (150.0 kB view details)

Uploaded Python 3

File details

Details for the file fastdfe-1.1.8.tar.gz.

File metadata

  • Download URL: fastdfe-1.1.8.tar.gz
  • Upload date:
  • Size: 138.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.8.3 CPython/3.11.0 Linux/6.5.0-1025-azure

File hashes

Hashes for fastdfe-1.1.8.tar.gz
Algorithm Hash digest
SHA256 ed64b2dc308127683fed7020df19d20782684819811d7bf143f527bfdfab8dfb
MD5 d48878600eb227675e163f83014bb04b
BLAKE2b-256 a95ec1a7fadcf1fc7db3ee7098d45c58c7475026dc9db83920278d32d7d81b6c

See more details on using hashes here.

File details

Details for the file fastdfe-1.1.8-py3-none-any.whl.

File metadata

  • Download URL: fastdfe-1.1.8-py3-none-any.whl
  • Upload date:
  • Size: 150.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.8.3 CPython/3.11.0 Linux/6.5.0-1025-azure

File hashes

Hashes for fastdfe-1.1.8-py3-none-any.whl
Algorithm Hash digest
SHA256 0e46fc5bc657a4aed8eda3b0124eb5bd8094a686b8ff9ac3490db0750d884eed
MD5 0db56d6f728f180f36057202e3a79a49
BLAKE2b-256 48306243b7e34a905a85deae14a6bfdc19c530545eac49c6f98a11bf7d0ba1d8

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page