Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for sendrowskij from gravatar.com sendrowskij

Unverified details

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Sendrowski

Requires: Python <3.13, >=3.10.0

Classifiers

Project description

fastDFE

tests codecov Documentation Status PyPI version DOI

fastdfe is a package for fast, flexible, and hierarchical inference of the distribution of fitness effects (DFE) from site frequency spectra (SFS). It also contains a versatile VCF-to-SFS parser with support for ancestral allele and site-degeneracy annotation.

Please see the documentation for all the details.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for sendrowskij from gravatar.com sendrowskij

Unverified details

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Sendrowski

Requires: Python <3.13, >=3.10.0

Classifiers

Release history Release notifications | RSS feed

This version

1.1.6

1.1.5

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.0

0.1.8b0 pre-release

0.1.7b0 pre-release

0.1.6b0 pre-release

0.1.5b0 pre-release

0.1.4b0 pre-release

0.1.3b0 pre-release

0.1.2b0 pre-release

0.1.1b0 pre-release

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

fastdfe-1.1.6.tar.gz (125.8 kB view hashes)

Uploaded Source

Built Distribution

fastdfe-1.1.6-py3-none-any.whl (137.2 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page