fastq-anonymous

Change the sequence and identifier of a fastq file to enable sharing of confidential information for troubleshooting

INSTALLATION

pip install fastq-anonymous

USAGE

Reads from stdin and writes to stdout. Sequences are by default
replaced by random nucleotides.
Fastq identifiers and description are also anonymized.
Read lengths and quality strings are preserverd.

optional arguments:
  -h, --help     show this help message and exit
  -v, --version  Print version and exit.
  -m, --mask     Mask all nucleotides using N

EXAMPLES

cat reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq

gunzip -c reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq

gunzip -c reads.fastq.gz | fastq-anonymous | gzip > anonymous_reads.fastq.gz

Metadata

Release files for fastq-anonymous 1.0.1

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Source distribution (sdist)

Source distribution for fastq-anonymous 1.0.1
File	Size	Uploaded	Provenance	Actions
fastq-anonymous-1.0.1.tar.gz	2.4 kB	Oct 19, 2017	Without provenance	Details for fastq-anonymous-1.0.1.tar.gz

Release files / fastq-anonymous-1.0.1.tar.gz

Download URL	fastq-anonymous-1.0.1.tar.gz
Size	2.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`8636162798aa0a69f7e4f3e3ae02fe8aafa559d5ff22f74ce447521355bdbb14`
BLAKE2b-256 checksum How to use checksums	`5c4cc41ec18367919df5c093e54d30ed10fb7a71e67dccb8eba7ad872ac5e19b`
Upload date	Oct 19, 2017
Uploaded using Trusted Publishing? What is trusted publishing?	No

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1.0.1 This release

Oct 19, 2017 1 release file No provenance

1.0.0