Change the sequence and identifier of a fastq file to enable sharing of confidential information for troubleshooting
INSTALLATION
pip install fastq-anonymous
USAGE
Reads from stdin and writes to stdout. Sequences are by default
replaced by random nucleotides.
Fastq identifiers and description are also anonymized.
Read lengths and quality strings are preserverd.
optional arguments: -h, --help show this help message and exit -v, --version Print version and exit. -m, --mask Mask all nucleotides using N
EXAMPLES
cat reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq
gunzip -c reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq
gunzip -c reads.fastq.gz | fastq-anonymous | gzip > anonymous_reads.fastq.gz1 maintainer
Metadata
1 maintainer
Release files for fastq-anonymous 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| fastq-anonymous-1.0.1.tar.gz | 2.4 kB | Details |
Release files / fastq-anonymous-1.0.1.tar.gz
| Download URL | fastq-anonymous-1.0.1.tar.gz |
|---|---|
| Size | 2.4 kB |
| Tags | Source |
|
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