fastqsplitter

A simple application to split FASTQ files.

Fastqsplitter reads a fastq file. It then splits the reads over the designated output files.

This application does NOT work with multiline fastq sequences.

Quickstart

install fastqsplitter: pip install fastqsplitter

To split an input file input_fastq.gz into 3 different files. fastqsplitter -i input_fastq.gz -o split.1.fq.gz -o split.2.fq.gz -o split.3.fq.gz

fastqsplitter uses the excellent xopen library by @marcelm. Therefore, the input and output files compression is determined by the extension. Use .gz if output files should be gzip compressed.

Documentation

More information on fastqsplitter can be found on our readthedocs page.

Project links

Key dates

PyPI data
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  • Released:
Newer release available (1.2.0)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for rhpvorderman from gravatar.com rhpvorderman

Credits

Author: Leiden University Medical Center

License

MIT License (MIT)

Requires

Python >=3.5

Tags

fastq split

Classifiers

Report project as malware

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