A package for processing FCS files
A package for processing FCS files.
Free software: MIT license
pip install fcsy
Read a fcs file to pandas DataFrame.
from fcsy.fcs import read_fcs df = read_fcs('input_file')
Read a fcs file with “long name”
df = read_fcs('input_file', name_type='long') # or only read the names from fcsy.fcs import read_fcs_names long_names = read_fcs_names('input_file', name_type='long')
Write a data frame to fcs. df.columns is written to both short and long names of the fcs.
from fcsy.fcs import write_fcs write_fcs(df, 'output_file')
Write to fcs with “long name”. df.columns and long_names are written to short and long names of the fcs.
write_fcs(df, 'output_file', long_names=['a','b','c'])
First release on PyPI.
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