fcsy 0.4.0

A package for processing FCS files

fcsy

A package for processing FCS files.

• Free software: MIT license

Installation

pip install fcsy

Usage

Read a fcs file to pandas DataFrame.

from fcsy import read_fcs

df = read_fcs('input_file')

Read a fcs file with “long name”

df = read_fcs('input_file', name_type='long')

# or only read the names
from fcsy import read_fcs_names

long_names = read_fcs_names('input_file', name_type='long')

Write a data frame to fcs. df.columns is written to both short and long names of the fcs.

from fcsy import write_fcs

write_fcs(df, 'output_file')

Write to fcs with “long name”. df.columns and long_names are written to short and long names of the fcs.

write_fcs(df, 'output_file', long_names=['a','b','c'])

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.0 (2018-12-18)

• First release on PyPI.