fgpyo 0.0.3

Python bioinformatics and genomics library

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fgpyo

pip install fgpyo

Requires python 3.6+

See documentation on fgpyo.readthedocs.org.

Getting Setup

Poetry is used to manage the python development environment.

A simple way to create an environment with the desired version of python and poetry is to use conda. E.g.:

conda create -n fgpyo python=3.6 poetry
conda activate fgpyo
poetry install

If, during poetry install on Mac OS X errors are encountered running gcc/clang to build pybedtools or other packages with native code, try setting the following and re-running poetry install:

export CFLAGS="-stdlib=libc++"