fhir-kindling 0.3.0

Generates synthetic FHIR resources.

FHIR Kindling

Synthetic FHIR resource generator and FHIR server data management tool. Documentation

Features

• CLI for step by step data set/FHIR resource creation
• Bundle creation, validation and data management on a FHIR server via the REST API
• Supports Hapi, Blaze and IBM FHIR servers

Installation

In a virtual environment clone the project and install it using pip:

cd fhir_kindling
pip install .

The fhir_kindling command should now be available in your shell (with the venv activated) test it with fhir_kindling --help

Usage

With the virtual environment activated you can use the CLI directly in the terminal directly

CLI - Uploading a bundle to a server

fhir_kindling upload <path-to-bundle.json> --url <base-url-fhir-api> -u <username> -p <password> --token <token>

CLI - Querying a server

For an overview of the options of the CLI query command

fhir_kindling query --help

Examples

To query all instances of a resource use the -r option. This command queries all Patients from the server and stores the results as csv into the query_results.json file.

fhir_kindling query -r Patient --url <base-url-fhir-api> -u <username> -p <password> --token <token> -f "query_results.csv" -o csv

This example uses the -q option to execute a predefined url query string against the server and also stores the output as csv in a file called query_results.csv

fhir_kindling query -q "/MolecularSequence?patient.organization.name=DEMO_HIV&_format=json" --url <base-url-fhir-api> -u <username> -p <password> --token <token> -f "query_results.csv" -o csv

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

Change Log

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

[0.1.0] - 2021-08-24

Initial cli

Added

Changed

Fixed

Hashing order guarantees the right index of the query.json file in the hash