fhirstore 0.0.2

Manipulating FHIR data leveraging MongoDB as storage layer

fhirstore

Python library to manipulate fhir resources leveraging mongoDB as storage layer.

Installation

pip install fhirstore

Usage

from pymongo import MongoClient
from fhirstore import FHIRStore

client = MongoClient()
store = FHIRStore(client, "<my_database>")

# Dropping collections
store.reset()

# Parse json schema and create collections
store.bootstrap(depth=5)

# Insert resources
store.create({
    "resourceType": "Patient",
    "gender": "male",
})

Bootstrap the database

1. Start the database
2. Drop and re-create all collections based on the provided schema

docker-compose up -d
python main.py

Development setup

1. Create a virtual environment and enter it
2. Install python dependncies

virtualenv . 
. ./bin/activate
pip install -r requirements.txt