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Latest Life-Line version of Fiji for easy inclusion in python projects.

Project description

This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.

Video demo


Current Fiji Life-Line version in this package is 2014 November 25.

If you experience any trouble with this module, please submit an issue or send a pull request on github.


pip install fijibin


>>> import fijibin
>>> fijibin.BIN
>>> fijibin.FIJI_VERSION

fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.


import fijibin.macro

Refetch binary

>>> from fijibin.fetch import fetch
>>> fetch()

See more in the API reference.


Install dependencies and link development version of fijibin to pip:

git clone
cd fijibin
pip install -r requirements.txt

run test

pip install tox

extra output, jump into pdb upon error

DEBUG=fijibin tox -- --pdb -s

build api reference

pip install -r docs/requirements.txt
make docs

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