Latest Life-Line version of Fiji for easy inclusion in python projects.
This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.
Current Fiji Life-Line version in this package is 2014 November 25.
If you experience any trouble with this module, please submit an issue or send a pull request on github.
pip install fijibin
>>> import fijibin >>> fijibin.BIN '/Users/arve/.bin/Fiji.app/Contents/MacOS/ImageJ-macosx' >>> fijibin.FIJI_VERSION '20141125'
fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.
import fijibin.macro macro.run(macro_string_or_list_of_strings)
>>> from fijibin.fetch import fetch >>> fetch()
See more in the API reference.
Install dependencies and link development version of fijibin to pip:
git clone https://github.com/arve0/fijibin cd fijibin pip install -r requirements.txt
pip install tox tox
extra output, jump into pdb upon error
DEBUG=fijibin tox -- --pdb -s
build api reference
pip install -r docs/requirements.txt make docs
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