This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

This software will download the latest Life-Line version of Fiji, make the correct cross-platform binary available and provide a macro submodule which makes automation of Fiji trivial from python.

Video demo

Current Fiji Life-Line version in this package is 2014 November 25.

If you experience any trouble with this module, please submit an issue or send a pull request on github.

Install

pip install fijibin

Usage

>>> import fijibin
>>> fijibin.BIN
'/Users/arve/.bin/Fiji.app/Contents/MacOS/ImageJ-macosx'
>>> fijibin.FIJI_VERSION
'20141125'

fijibin.BIN will point to linux, mac or windows version, depending on the operating system detected via platform.

Macros

import fijibin.macro
macro.run(macro_string_or_list_of_strings)

Refetch binary

>>> from fijibin.fetch import fetch
>>> fetch()

See more in the API reference.

Development

Install dependencies and link development version of fijibin to pip:

git clone https://github.com/arve0/fijibin
cd fijibin
pip install -r requirements.txt

run test

pip install tox
tox

extra output, jump into pdb upon error

DEBUG=fijibin tox -- --pdb -s

build api reference

pip install -r docs/requirements.txt
make docs
Release History

Release History

0.3.0

This version

History Node

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Changelog content for this version goes here.

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0.2.1

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0.2.0

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0.1.0

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0.0.5

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0.0.4

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0.0.3

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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0.0.2

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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0.0.1

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Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
fijibin-0.3.0-py3-none-any.whl (7.9 kB) Copy SHA256 Checksum SHA256 3.4 Wheel Apr 22, 2015
fijibin-0.3.0.tar.gz (727.7 kB) Copy SHA256 Checksum SHA256 Source Apr 22, 2015

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