fillet 0.0.3

Assistance scripts for ONT MinKNOW

fillet

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Table of Contents

Click to expand

• Introduction
• Installation
  • PyPI
  • GitHub
• Usage

Introduction

fillet is a simulation manager for Oxford Nanopore Technologies MinKNOW software, making adding simulation devices and playback runs easier

Installation

Installing fillet with PyPI

pip install fillet

Install fillet from GitHub

git clone https://github.com/alexomics/fillet
cd fillet
python setup.py install

Usage

fillet installs with a terminal entry point as fillet

Add a bulk FAST5 file for simulation:

fillet sim -t <MinKNOW_config_filename> -b <bulk_file_to simulate>

Remove a bulk FAST5 file for simulation:

fillet sim -t <MinKNOW_config_filename>

Add a simulation device:

fillet add

Remove a simulation device:

fillet add -r