Skip to main content

Assistance scripts for ONT MinKNOW

Project description

fillet


Table of Contents

Click to expand

Introduction

fillet is a simulation manager for Oxford Nanopore Technologies MinKNOW software, making adding simulation devices and playback runs easier

Installation

Installing fillet with PyPI

pip install fillet

Install fillet from GitHub

git clone https://github.com/alexomics/fillet
cd fillet
python setup.py install

Usage

fillet installs with a terminal entry point as fillet

Add a bulk FAST5 file for simulation:

fillet sim -t <MinKNOW_config_filename> -b <bulk_file_to simulate>

Remove a bulk FAST5 file for simulation:

fillet sim -t <MinKNOW_config_filename>

Add a simulation device:

fillet add

Remove a simulation device:

fillet add -r

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

fillet-0.0.2.tar.gz (4.3 kB view hashes)

Uploaded Source

Built Distribution

fillet-0.0.2-py3-none-any.whl (18.0 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page