findCP CLI package
Project description
findCPcli
Source
Table of Contents
Install
$ pip install findCPcli
Run
$ findCPcli [-h] [-v] -i <input file> [-o <output file>]
[-cp <output file>] [-swD <output file>] [-sF <output file>]
[-swDF <output file>]
optional arguments:
-h, --help show this help message and exit
-v, --verbose Print feedback while running.
-i <input file> Input metabolic model. Allowed file formats: .xml .json
.yml
-o <output file> Output spreadsheet file with results. Allowed file
formats: .xls .xlsx .ods
-cp <output file> Output spreadsheet file with growth dependent
chokepoints. Allowed file formats: .xls .xlsx .ods
-swD <output file> Save output model without Dead End Metabolites. Allowed
file formats: .xml .json .yml
-sF <output file> Save output model with reactions bounds updated with
Flux Variability Analysis. Allowed file formats: .xml
.json .yml
-swDF <output file> Save output model with reactions bounds updated with
Flux Variability Analysis and without Dead End
Metabolites. Allowed file formats: .xml .json .yml
Maintainers
Contributing
Feel free to dive in! Open an issue or submit PRs.
Standard Readme follows the Contributor Covenant Code of Conduct.
License
MIT © Alex Oarga
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
findCPcli-0.0.6.tar.gz
(3.4 kB
view hashes)
Built Distribution
Close
Hashes for findCPcli-0.0.6-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | a57bc2a7f08a51e1c8febae958376a740adf73d8743c7b2926a71ac226d82cc0 |
|
MD5 | fc7b6994bc84c4200fb9ced09fa053a0 |
|
BLAKE2b-256 | d5d2a4b2d9b9423cb3914b06a257e57efacf2d3c4e21c4e2d19e0c9e564a4426 |