fjd 0.1.15

File-based job distribution for everyone

File-based job distribution on Unix-PCs. A straightforward pull-model for computational tasks, working with the assumption that all CPUs/cores can access a shared home directory.

Usage

• Start one or more fjd-worker threads, like this:

  $ fjd-recruiter hire <number of workers>

• Put jobs in the queue. You do this by putting a configuration file per job in the jobqueue directory. I’ll talk about the details of these job files below and there is an example.

• Then, start a dispatcher:

  $ fjd-dispatcher

Now the fjd-dispatcher assigns jobs to fjd-worker threads who are currently not busy. This goes on until the job queue is empty.

Installation

$ pip install fjd

If you do not have enough privileges (look for something like “Permission denied” in the output), install locally (for your user account only):

$ pip install fjd --user

If you do not have pip installed (I can’t wait for everyone running Python 3.4), I made a small script. which should help to install all needed things. Download it and make it executable:

$ wget https://raw.github.com/nhoening/fjd/master/fjd/scripts/INSTALL
$ chmod +x INSTALL

Now you can install system-wide:

$ ./INSTALL

or, if you do not have enough privileges, you can also install locally:

$ source INSTALL --user

If you installed locally, this should be added to your ``~/.bashrc`` or ``~/.profile`` file::

export PATH=~/.local/bin:$PATH

How does fjd work, in a nutshell?

Small files in your home directory are used to indicate which jobs have to be done (these are created by you) and which workers are available (these are created automatically). Files are also used by fjd to assign workers to jobs.

This simple file-based approach makes fjd very easy to use.

For CPUs from several machines to work on your job queue, we make one necessary assumption: We assume that there is a shared home directory for logged-in users, which all machines can access. This setting is very common now in universities and companies.

A little bit more detail about the fjd internals: The fjd-recruiter creates worker threads on one or more machines. The fjd-worker processes announce themselves in the workerqueue directory. The fjd-dispatcher finds your jobs in the jobqueue directory and pairs a job with an available worker. It then removes those entries from the jobqueue and workerqueue directories and creates a new entry in jobpods, where workers will pick up their assignments.

All of these directories exist in ~/.fjd and will of course be created if they do not yet exist.

Job files

A job file should adhere to the general configuration file standard, where fjd only has some requirements for the control section, where you specify which command to execute and where results should go. Here is an example:

[control]
executable: python example/ajob.py
logfile: logfiles/job0.dat

[params]
param1: value0

Your executable (the “job”) gets this configuration file passed as a command line argument. This way, it can see for itself in which logfile to write to.

Take care to get the relative paths correct (or simply make them absolute): If the paths are relative, the path to the executable should be relative to the workers working directory, whereas the path to the logfile should be relative to the jobs working directory.

In addition, you can put other job-specific configuration in there for the executable to see, as I did here in the [params]-section (in fact, only the [control]-section is fjd-specific).

An example (on your local machine)

You can see how it all comes together by looking at the simple example in the example directory where there is one script that represents a job (example/ajob.py) and one that creates ten jobs similar to the one we saw above and puts them in the queue (example/create_jobs.py).

To run this example, create jobs using the second script, recruit some workers and start a dispatcher. Then, lean back and observe. We have a script that does all of this in run-example.sh:

#/bin/bash

python create_jobs.py
fjd-recruiter hire 4
fjd-dispatcher

And this is output similar to what you should see:

$ cd fjd/example
$ ./run-example.sh
[FJD] No workers busy in project "default" on localhost.
[FJD] Hired 4 workers in project "default" on localhost.
[FJD] Dispatcher started on project "default"
[FJD] Found 10 jobs and 4 workers. Dispatching ...
[FJD] Found 6 jobs and 1 workers. Dispatching ...
[FJD] Found 5 jobs and 3 workers. Dispatching ...
[FJD] Found 2 jobs and 1 workers. Dispatching ...
[FJD] Found 1 jobs and 1 workers. Dispatching ...
[FJD] No (more) jobs to dispatch.
[FJD] Fired 4 workers in project "default" on localhost.

Note that the Dispatcher is started after jobs are created because per default, it will fire workers (kill screen sessions) and terminate itself once it finds the queue of jobs being empty. This behaviour can be overwritten with a parameter if needed and then you could have the dispacther running and push jobs in the queue whenever you like.

And you’ll see the results, the log files written by our example jobs:

$ ls logfiles/
job0.dat    job2.dat        job4.dat        job6.dat        job8.dat
job1.dat    job3.dat        job5.dat        job7.dat        job9.dat

Workers are Unix screen sessions, you can see them by typing

$ screen -ls

and inspect them if you want. By the way, you can always fire workers by hand:

$ fjd-recruiter fire

Here is the log from a screen session of a worker if you’re interested:

$ fjd-worker --project default
[FJD] Worker with ID nics-macbook.fritz.box_1382522062.31 started.
[FJD] Worker nics-macbook.fritz.box_1382522062.31: I found a job.
[FJD] Worker nics-macbook.fritz.box_1382522062.31: Finished my job.
[FJD] Worker nics-macbook.fritz.box_1382522062.31: I found a job.
[FJD] Worker nics-macbook.fritz.box_1382522062.31: Finished my job.

An example (using several machines in your network)

TODO CHANGES ====================

(Changes are not tracked yet, too early …)