Yet another Python library to work with taxonomy databases
Project description
Parse and query different taxonomic databases
Aims
- Work with taxonomic databases from data dump flatfiles.
- Load them directly into memory for queries and other operations.
- Use same internal data structures and methods for different source DBs.
- Report output as far as possible with DwC terms.
Such functionality is available with the R package
taxadb, but we wish to work in Python
with few dependencies as possible.
Databases supported
- NCBI Taxonomy (names.dmp and nodes.dmp file from taxdump)
- Tested with version 2022-12-01
- GBIF Backbone Taxonomy (Taxon.tsv file from backbone dump)
- Tested with version 2021-11-26
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
flattaxdb-0.1.0.tar.gz
(7.4 kB
view details)
Built Distribution
File details
Details for the file flattaxdb-0.1.0.tar.gz.
File metadata
- Download URL: flattaxdb-0.1.0.tar.gz
- Upload date:
- Size: 7.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | e7e1a7adb2875d1b66944ac8f3c72826d478342157378ff63928b3efb102d413 |
|
| MD5 | f9c960c92f2b4cfc9ee900d7aa525281 |
|
| BLAKE2b-256 | 41315792713ef0bbc8cb12c894f6f5ea2d6670544ae5f4fba3fd5564d6226860 |
File details
Details for the file flattaxdb-0.1.0-py3-none-any.whl.
File metadata
- Download URL: flattaxdb-0.1.0-py3-none-any.whl
- Upload date:
- Size: 7.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | df892947b9255d6d05eb27a742a6462732561c9c8d7aabad2e8e19b3cd674938 |
|
| MD5 | e1ee31b45659c31a36fb5e835c1ff0d0 |
|
| BLAKE2b-256 | 051e7e6466e39d4bc22d766c42c1b7aeefab76c474a3077eda6adf1ba93d71a5 |
