Flight
The python component used by Lorikeet and Rosella
Installation
This module is only used in conjunction with other programs, but if you wish to install and play around with the code follow these instructions:
git clone https://github.com/rhysnewell/flight.git
cd flight
conda env create -n flight -f flight.yml
conda activate flight
pip install .
flight bin --help
Requirements
Initial requirements for flight can be downloaded using the flight.yml:
conda env create -n flight -f flight.yml
Usage
To perform mag recovery:
flight bin --assembly scaffolds.fasta --input coverm.cov --output output_dir/ --threads 24
3 maintainers
Metadata
3 maintainers
Release files for flight-genome 1.6.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| flight-genome-1.6.3.tar.gz | 60.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| flight_genome-1.6.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 130.0 kB
Release files / flight-genome-1.6.3.tar.gz
| Download URL | flight-genome-1.6.3.tar.gz |
|---|---|
| Size | 60.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
5ba602c4936ddd514ebd8e70f6c1efb5648b752124fb901671147c4e71c08dd8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.18
|
Release files / flight_genome-1.6.3-py3-none-any.whl
| Download URL | flight_genome-1.6.3-py3-none-any.whl |
|---|---|
| Size | 69.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
b68699409c44af015670ea32b4e4656e6e47c5574ee383618caf37b891ad5a27
|
|
BLAKE2b-256 checksum How to use checksums |
c0b399ca1cd419cf429385f7acf2fee4b18d27c388d4f38bb31247ae6df16ce8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.18
|
