flumut-gui 3.1.0

Graphical frontend for the FluMut bioinformatic tool

FluMutGUI

FluMut is an open-source tool designed to search for molecular markers with potential impact on the biological characteristics of Influenza A viruses of the A(H5N1) subtype, starting from complete or partial nucleotide genome sequences.

FluMutGUI is a graphical interface for FluMut, to make it easier to use.

For the complete documentation please visit FluMut site.

Installation

Installer

This is the easiest way to install FluMutGUI. At the moment is available only for Windows, but we plan to release soon also installers for MacOS and Linux.

Download the installer for your OS and follow instructions to install FluMutGUI:

• Windows
• MacOS (available soon)
• Linux (available soon)

Pip

FluMutGUI is available also on PyPI. This option is available for Windows, MacOS and Linux. Before installing FluMut via Pip you need:

• Python
• Pip (often packed with Python)

Then, you can install FluMutGUI with this command:

pip install flumut-gui

Usage

FluMutGUI is very simple to use:

1. Update the database to latest version
2. Select the FASTA file you want to analyze (learn more here)
3. Select which outputs you want (and change the file name if you want)
4. Start the analysis

Wait, when the analysis ends you'll get a message.

Cite FluMutGUI

We are currently writing the paper. Until the publication please cite the FluMut GitHub repository:

https://github.com/izsvenezie-virology/FluMut

License

FluMutGUI is licensed under the GNU Affero v3 license (see LICENSE).

Fundings

This work was supported by FLU-SWITCH Era-Net ICRAD (grant agreement No 862605) and by the NextGeneration EU-MUR PNRR Extended Partnership initiative on Emerging Infectious Diseases (Project no. PE00000007, INF-ACT)

Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Health and Digital Executive Agency (HEDEA). Neither the European Union nor the granting authority can be held responsible for them