This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
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Project Description
This package is a functional magnetic resonance image preprocessing pipeline that is designed to

provide an easily accessible, state-of-the-art interface that is robust to differences in scan

acquisition protocols and that requires minimal user input, while providing easily interpretable

and comprehensive error and output reporting. This open-source neuroimaging data processing tool

is being developed as a part of the MRI image analysis and reproducibility platform offered by the

CRN. This pipeline is heavily influenced by the `Human Connectome Project analysis pipelines

<https: github.com="" washington-university="" pipelines="">`_ and, as such, the backbone of this pipeline

is a python reimplementation of the HCP `GenericfMRIVolumeProcessingPipeline.sh` script. However, a

major difference is that this pipeline is executed using a `nipype workflow framework

<http: nipype.readthedocs.io="" en="" latest=""/>`_. This allows for each call to a software module or binary

to be controlled within the workflows, which removes the need for manual curation at every stage, while

still providing all the output and error information that would be necessary for debugging and interpretation

purposes. The fmriprep pipeline primarily utilizes FSL tools, but also utilizes ANTs tools at several stages

such as skull stripping and template registration. This pipeline was designed to provide the best software

implementation for each state of preprocessing, and will be updated as newer and better neuroimaging software

become available.
Release History

Release History

0.2.0

This version

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0.1.2a3

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0.1.2a2

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0.1.2a1

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0.1.2a0

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0.1.1

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0.1.1a3

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0.1.1a1

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0.1.0

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0.0.4

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0.0.3

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0.0.2

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Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
fmriprep-0.2.0.tar.gz (48.6 kB) Copy SHA256 Checksum SHA256 Source Jan 13, 2017

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