ColabFold modified for AlphaFold2 and local installation
Project description
Folding
Folding is a streamlined version of ColabFold that focuses on running AlphaFold2 locally on Linux systems. It combines the power of ColabFold and LocalColabFold to provide an easy-to-use tool for protein structure prediction.
Features
- Supports AlphaFold2 for protein structure prediction
- Includes
folding-search
andfolding-batch
functionalities
Requirements
- Linux
- RTX 4070 or greater
Installation
- Clone this repository or download it to your local machine.
- Navigate to the folding directory:
cd /path/to/folding
- Run the installation script:
bash install.sh
- After installation, add the folding conda environment to your PATH:
export PATH="/path/to/folding/folding-conda/bin:$PATH"
Usage
folding-search
To use folding-search
:
folding-search [OPTIONS] QUERY_FILE RESULTS_DIR
For more details on available options, run:
folding-search --help
folding-batch
To use folding-batch
:
folding-batch [OPTIONS] INPUT_DIR OUTPUT_DIR
For more details on available options, run:
folding-batch --help
Support
For issues and feature requests, please open an issue on the GitHub repository.
License
This project is licensed under the MIT License. See the LICENSE file for details.
Acknowledgements
folding is based on the work of ColabFold and LocalColabFold. We thank the original authors and contributors of these projects for their valuable work in the field of protein structure prediction.
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