fractal-faim-ipa 0.3.0

Provides Fractal tasks for the MD to OME-Zarr conversion of faim-ipa

fractal-faim-hcs

Provides Fractal tasks for the conversion of Molecular Devices ImageXpress microscope to OME-Zarr.

The conversion based on the faim-ipa library. This repo also contains some of the test data from the faim-ipa library, as well as test data from the ZMB provided by @fstur.

To use the MD Converter Task in Fractal, add the package form PyPI to your Fractal server by installing fractal-faim-ipa.

Development

You can install it locally in this way:

git clone https://github.com/jluethi/fractal-faim-hcs
cd fractal-faim-hcs
pip install -e .

Adding tasks to Fractal server

You can trigger a manual collection of the tasks:

1. Create a package wheel:

pip install build
python -m build

This wheel is put into the dist folder.

2. Collect your package from Fractal web: use the local task collection in fractal web and provide the /path/to/package/dist/faim-ipa-version-details.whl

Alternatively, you can collect the task in Fractal via the CLI tool:

fractal task collect /path/to/package/dist/faim-ipa-version-details.whl